Apple Crisp Cheesecake Bites

Section: Irresistible Desserts

Enjoy the perfect combination of creamy cheesecake and spiced apple filling, topped with a buttery crumble. Each bite features a base of graham crackers with a cinnamon touch, filled with smooth cheesecake and homemade apple blend, then finished with a golden oat topping. Serve these at gatherings or as an individual treat that's balanced with hints of nutmeg and brown sugar, offering both comfort and elegance. Whether enjoyed chilled or topped with caramel, these mini desserts deliver rich flavors and textures in every portion.

Ranah
Created By Seham
Updated on Sat, 08 Nov 2025 14:44:18 GMT
A close up of a dessert with apple crisp cheesecake bites. Save
A close up of a dessert with apple crisp cheesecake bites. | bakeitgood.com

Apple crisp cheesecake bites are my secret weapon for cozy gatherings or satisfying a sweet craving when you do not want to fuss with a big dessert. Each little bite packs creamy cinnamon cheesecake, a fresh apple pie filling, a buttery graham crust, and that irresistible crisp topping. They deliver all the nostalgic flavor of fall in a perfectly portioned treat you can eat with your hands.

My family went wild for these when I surprised them with a batch one rainy Sunday afternoon. They disappeared faster than any full-size pie or cheesecake I have ever made.

Ingredients

  • Graham cracker crumbs: Provide a toasty crunchy base use fresh crackers for best flavor
  • Granulated sugar and brown sugar: For sweetness and caramel notes choose fine sugar for easy blending
  • Cinnamon and nutmeg: Bring deep warmth try to use freshly ground spices if you can
  • Butter: Helps the crust bind and adds rich flavor use real unsalted butter
  • Cream cheese: Needs to be fully softened for a smooth creamy cheesecake center
  • Vanilla extract: Boosts the overall aroma real vanilla adds the best flavor
  • Large eggs: Help set the cheesecake be sure they are room temperature for easy mixing
  • Apples: Add juicy tart contrast I love Honeycrisp or Granny Smith dice them small for tender bites
  • Lemon juice: Keeps apples bright and adds a pop of acidity
  • Cornstarch: Thickens the apple filling so it is not runny
  • Quick oats: In the crumble topping add texture regular oats will work in a pinch
  • Optional caramel sauce: The finishing touch for extra decadence

Instructions

Prepare the Crust:
Preheat the oven to three hundred fifty degrees F and line sixteen muffin cups. Process graham crackers into very fine crumbs. Stir in sugar cinnamon and melted butter until everything looks like wet sand. Drop about one tablespoon into each liner and press down very firmly. This gives you a tight base for the layers to come.
Mix the Cheesecake Filling:
With your stand mixer beat the cream cheese until velvety smooth. Once it looks cloudlike and lump free add sugar cinnamon and vanilla and keep mixing. Scrape the sides religiously to make sure every bit is incorporated then finish by beating in the eggs one at a time. Only mix until just blended or the bites may crack.
Portion the Cheesecake Layer:
Spoon about three tablespoons of batter into each crust. The batter should sit about halfway up the liner. If you want perfectly even bites I use a small ice cream scoop for this.
Make the Apple Filling:
In a clean bowl toss freshly diced apples with lemon juice until every piece is glossy. Add cinnamon nutmeg brown sugar and cornstarch tossing again until evenly coated. Layer one to two tablespoons over each little cheesecake taking care to spread the apples out.
Create the Crumble Topping:
Whisk flour oats brown sugar and cinnamon in a fresh bowl. Drizzle melted butter over and use a fork to toss until the mixture forms moist clumps. Sprinkle generously over each muffin cup so you get golden crispy bits on every bite.
Bake the Cheesecake Bites:
Bake for about twenty five to thirty minutes. You are looking for the centers to be just barely wobbly not wet. Let cool completely on a wire rack so they firm up.
Chill and Serve:
Once cooled let them chill in the fridge until fully set. Peel off the wrappers right before serving and top with caramel sauce if you wish.
A close up of a cupcake with caramel drizzled on top.
A close up of a cupcake with caramel drizzled on top. | bakeitgood.com

My favorite part is sneaking a spoonful of that chunky cinnamon apple filling straight from the bowl. My daughter always asks to sprinkle the crumble topping on and we make a game of seeing who builds the tallest pile.

Storage Tips

Keep your apple crisp cheesecake bites in a covered container in the fridge. They will stay fresh for up to three days. If you want to store them longer I find they freeze beautifully once fully cooled and set. Place in a single layer for an hour then pile into a zip top bag.

Ingredient Substitutions

If you are out of graham crackers shortbread cookies are another great base. Feel free to swap pears for apples or use gluten free flour and oats for sensitive eaters. No quick oats on hand old fashioned oats will bake up a bit chewier but still work.

Serving Suggestions

Top each cheesecake bite with whipped cream or a swirl of caramel sauce for extra decadence. These are just as tasty for brunch as they are for dessert after dinner. For a pretty presentation slice thin rounds of apple as a garnish on top.

Cultural Notes

Apple crisp cheesecake bites bring together that classic American love for cheesecake with fall apple crisp. This is the kind of modern twist that shows up at Midwest potlucks and holiday dessert bars from coast to coast.

Seasonal Adaptations

Add diced pears or cranberries around the holidays Toss in a pinch of cloves for winter spice Try peaches or fresh berries in spring for a bright twist

Success Stories

A friend made these for her daughter’s bake sale and they were snapped up within minutes. I have also made them gluten free for a family reunion and everyone asked for the recipe.

Freezer Meal Conversion

Once your bites are baked and cooled freeze on a tray so they do not stick. Once solid pop them in a bag or airtight box and keep for up to two months. Thaw overnight in the refrigerator for best texture.

A cupcake with caramel sauce drizzled on top.
A cupcake with caramel sauce drizzled on top. | bakeitgood.com

These apple crisp cheesecake bites are worth every step. You may want to make a double batch—everyone will ask for seconds.

Common Recipe Questions

→ How do I prevent the cheesecake layer from cracking?

Avoid overmixing the batter, especially once eggs are added. Allow the bites to cool gradually on a wire rack before refrigerating.

→ Can I use store-bought apple pie filling instead of making it from scratch?

Yes, store-bought filling saves time, but fresh apples offer a brighter flavor and texture in each bite.

→ What apples are best for the filling?

Firm, tart varieties like Granny Smith or Honeycrisp hold their shape and balance the sweetness of the layers.

→ Do I need to wait before serving after baking?

Allow the cheesecakes to cool completely and chill in the refrigerator for best texture and flavor before serving.

→ How should I store leftovers?

Keep the bites in an airtight container in the fridge for up to three days to maintain their freshness and texture.

→ Can these be frozen for later?

Yes, ensure the bites are well wrapped and freeze for up to one month. Thaw in the refrigerator before serving.

Apple Crisp Cheesecake Bites

Creamy cheesecake, fresh apples, and crisp crumble combine in each delicious handheld treat.

Preparation Time
10 minutes
Cook Time
25 minutes
Total Cooking Time
35 minutes
Created By: Seham

Recipe Type: Irresistible Desserts

Difficulty Level: Moderate Level

Type of Cuisine: American

Portions: 16 Number of Servings (16 individual cheesecake bites)

Dietary Options: Vegetarian-Friendly

Ingredients You'll Need

→ Crust

01 180 g graham cracker crumbs
02 13 g granulated sugar
03 1.5 g ground cinnamon
04 115 g unsalted butter, melted

→ Cheesecake Filling

05 450 g cream cheese, at room temperature
06 150 g granulated sugar
07 2 g ground cinnamon
08 10 ml vanilla extract
09 2 large eggs

→ Apple Filling

10 2 medium apples, diced
11 10 ml fresh lemon juice
12 3 g ground cinnamon
13 0.5 g ground nutmeg
14 28 g brown sugar, packed
15 5 g cornstarch

→ Crumble Topping

16 64 g all-purpose flour
17 22 g quick oats
18 55 g brown sugar, packed
19 1.5 g ground cinnamon
20 28 g unsalted butter, melted

→ Optional Garnish

21 Caramel sauce, to serve

How to Make It

Step 01

Preheat oven to 175°C and line 16 muffin cups with paper liners.

Step 02

Combine graham cracker crumbs, sugar, and cinnamon in a food processor. Add melted butter and pulse until evenly moistened. Distribute about 1 tablespoon of mixture into each muffin cup and press firmly to form a base. Set aside.

Step 03

In a stand mixer fitted with the paddle attachment, cream the room-temperature cream cheese until completely smooth, about 4 minutes. Add sugar, cinnamon, and vanilla extract; blend until cohesive. Scrape down sides and mix for 1 additional minute. Add eggs one at a time, mixing only until just incorporated after each addition.

Step 04

Divide cheesecake batter evenly among muffin cups, using approximately 3 tablespoons per cup.

Step 05

In a bowl, toss diced apples with lemon juice. Add cinnamon, nutmeg, brown sugar, and cornstarch; mix until apples are evenly coated. Spoon 1-2 tablespoons of apple filling over each cheesecake portion.

Step 06

In a separate bowl, whisk together flour, oats, brown sugar, and cinnamon. Add melted butter and blend with a fork until crumbly and no dry spots remain.

Step 07

Sprinkle crumble topping over the apples on each filled cup. Bake in the centre of the oven for 25-30 minutes, until centres are just set with a slight jiggle.

Step 08

Remove cheesecakes from oven and place muffin tin on a wire rack. Allow to cool completely, then refrigerate until fully set and ready to serve.

Step 09

For serving, optionally drizzle caramel sauce atop each cheesecake bite. Store leftovers in an airtight container in the refrigerator up to three days.

Extra Information

  1. Use firm baking apples for the filling, such as Granny Smith or Honeycrisp, to maintain texture after baking.
  2. Allow cheesecake bites to cool entirely before removing from the liners to ensure clean edges.

Essential Tools

  • Food processor
  • Stand mixer with paddle attachment
  • Muffin tin with 16 paper liners
  • Mixing bowls
  • Wire rack

Allergy Warnings

Be sure to review every ingredient for potential allergens. Reach out to a healthcare provider if necessary.
  • Contains milk (dairy), eggs, wheat (gluten)

Nutrition Details (Per Portion)

This information is meant for educational use and shouldn't replace medical guidance.
  • Calorie Count: 215
  • Total Fats: 12 grams
  • Carbohydrate Content: 24 grams
  • Protein Amount: 3 grams